IL_5U4I_058

3D structure

PDB id

5U4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UAAGC*GUGAUG

Length

11 nucleotides

Bulged bases

5U4I|1|A|U|1523

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5U4I_058 not in the Motif Atlas

Geometric match to IL_3BNN_006

Geometric discrepancy: 0.2927

The information below is about IL_3BNN_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25186.4

Basepair signature

cWW-L-R-L-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

5U4I|1|A|U|1468
5U4I|1|A|A|1469
5U4I|1|A|A|1470
5U4I|1|A|G|1471
5U4I|1|A|C|1472
*
5U4I|1|A|G|1519
5U4I|1|A|U|1520
5U4I|1|A|G|1521
5U4I|1|A|A|1522
5U4I|1|A|U|1523
5U4I|1|A|G|1524

Current chains

Chain A

23S rRNA

Nearby chains