IL_5U4I_089

3D structure

PDB id

5U4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

5U4I|1|A|U|2130, 5U4I|1|A|U|2131, 5U4I|1|A|U|2132

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5U4I_089 not in the Motif Atlas

Geometric match to IL_5J7L_330

Geometric discrepancy: 0.3143

The information below is about IL_5J7L_330

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

5U4I|1|A|C|2129
5U4I|1|A|U|2130
5U4I|1|A|U|2131
5U4I|1|A|U|2132
5U4I|1|A|G|2133
5U4I|1|A|A|2134
5U4I|1|A|A|2135
5U4I|1|A|G|2136
*
5U4I|1|A|U|2155
5U4I|1|A|G|2156
5U4I|1|A|G|2157
5U4I|1|A|A|2158
5U4I|1|A|G|2159

Current chains

Chain A

23S rRNA

Nearby chains