IL_5U4I_090
3D structure
- PDB id
- 5U4I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GUUGA*UUGC
- Length
- 9 nucleotides
- Bulged bases
- 5U4I|1|A|U|2203
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5U4I_090 not in the Motif Atlas
- Homologous match to IL_4WF9_085
- Geometric discrepancy: 0.4671
- The information below is about IL_4WF9_085
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67743.1
- Basepair signature
- cWW-cWW-cWH-cWW
- Number of instances in this motif group
- 9
Unit IDs
5U4I|1|A|G|2201
5U4I|1|A|U|2202
5U4I|1|A|U|2203
5U4I|1|A|G|2204
5U4I|1|A|A|2205
*
5U4I|1|A|U|2219
5U4I|1|A|U|2220
5U4I|1|A|G|2221
5U4I|1|A|C|2222
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain C
- 50S ribosomal protein L2
- Chain H
- 50S ribosomal protein L9
- Chain Y
- 50S ribosomal protein L28
Coloring options: