IL_5U4I_136

3D structure

PDB id

5U4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5U4I_136 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.1667

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

5U4I|1|a|U|409
5U4I|1|a|G|410
5U4I|1|a|A|411
5U4I|1|a|A|412
5U4I|1|a|G|413
5U4I|1|a|A|414
5U4I|1|a|A|415
5U4I|1|a|G|416
*
5U4I|1|a|U|427
5U4I|1|a|G|428
5U4I|1|a|U|429
5U4I|1|a|A|430
5U4I|1|a|A|431
5U4I|1|a|A|432
5U4I|1|a|G|433

Current chains

Chain a

16S rRNA

Nearby chains

Chain d

30S ribosomal protein S4