IL_5U4I_138

3D structure

PDB id

5U4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

5U4I|1|a|U|485

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5U4I_138 not in the Motif Atlas

Geometric match to IL_5J7L_022

Geometric discrepancy: 0.1976

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

5U4I|1|a|G|446
5U4I|1|a|G|447
5U4I|1|a|A|448
5U4I|1|a|G|449
5U4I|1|a|G|450
*
5U4I|1|a|C|483
5U4I|1|a|G|484
5U4I|1|a|U|485
5U4I|1|a|U|486
5U4I|1|a|A|487
5U4I|1|a|C|488

Current chains

Chain a

16S rRNA

Nearby chains

Chain d

30S ribosomal protein S4

Chain p

30S ribosomal protein S16