3D structure

PDB id
5U4I (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
GUGAAAUCCC*GGAACUGC
Length
18 nucleotides
Bulged bases
5U4I|1|a|U|632
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5U4I_146 not in the Motif Atlas
Homologous match to IL_6CZR_138
Geometric discrepancy: 0.5352
The information below is about IL_6CZR_138
Detailed Annotation
tSH-tHW-tHH-tHS
Broad Annotation
No text annotation
Motif group
IL_57273.1
Basepair signature
cWW-cWW-L-R-L-R-L-R-L-R-L-R-cWW
Number of instances in this motif group
2

Unit IDs

5U4I|1|a|G|604
5U4I|1|a|U|605
5U4I|1|a|G|606
5U4I|1|a|A|607
5U4I|1|a|A|608
5U4I|1|a|A|609
5U4I|1|a|U|610
5U4I|1|a|C|611
5U4I|1|a|C|612
5U4I|1|a|C|613
*
5U4I|1|a|G|627
5U4I|1|a|G|628
5U4I|1|a|A|629
5U4I|1|a|A|630
5U4I|1|a|C|631
5U4I|1|a|U|632
5U4I|1|a|G|633
5U4I|1|a|C|634

Current chains

Chain a
16S rRNA

Nearby chains

Chain d
30S ribosomal protein S4
Chain h
30S ribosomal protein S8
Chain p
30S ribosomal protein S16
Chain q
30S ribosomal protein S17

Coloring options:


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