IL_5U4I_174

3D structure

PDB id

5U4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5U4I_174 not in the Motif Atlas

Homologous match to IL_5J7L_057

Geometric discrepancy: 0.156

The information below is about IL_5J7L_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

5U4I|1|a|C|1303
5U4I|1|a|G|1304
5U4I|1|a|G|1305
5U4I|1|a|A|1306
5U4I|1|a|U|1307
5U4I|1|a|U|1308
*
5U4I|1|a|A|1329
5U4I|1|a|U|1330
5U4I|1|a|G|1331
5U4I|1|a|A|1332
5U4I|1|a|A|1333
5U4I|1|a|G|1334

Current chains

Chain a

16S rRNA

Nearby chains

Chain m

30S ribosomal protein S13