IL_5U4I_188

3D structure

PDB id

5U4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUGGGAGG*CCGACCUUGAAAUACCAC

Length

26 nucleotides

Bulged bases

5U4I|1|A|A|2163, 5U4I|1|A|C|2164, 5U4I|1|A|U|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5U4I|1|A|G|2121
5U4I|1|A|U|2122
5U4I|1|A|G|2123
5U4I|1|A|G|2124
5U4I|1|A|G|2125
5U4I|1|A|A|2126
5U4I|1|A|G|2127
5U4I|1|A|G|2128
*
5U4I|1|A|C|2160
5U4I|1|A|C|2161
5U4I|1|A|G|2162
5U4I|1|A|A|2163
5U4I|1|A|C|2164
5U4I|1|A|C|2165
5U4I|1|A|U|2166
5U4I|1|A|U|2167
5U4I|1|A|G|2168
5U4I|1|A|A|2169
5U4I|1|A|A|2170
5U4I|1|A|A|2171
5U4I|1|A|U|2172
5U4I|1|A|A|2173
5U4I|1|A|C|2174
5U4I|1|A|C|2175
5U4I|1|A|A|2176
5U4I|1|A|C|2177

Current chains

Chain A

23S rRNA

Nearby chains

Chain y

Transfer RNA; tRNA