IL_5U4I_207

3D structure

PDB id

5U4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGUAAG*UUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5U4I_207 not in the Motif Atlas

Homologous match to IL_9DFE_109

Geometric discrepancy: 0.1949

The information below is about IL_9DFE_109

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_48489.1

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

8

Unit IDs

5U4I|1|A|U|2847
5U4I|1|A|G|2848
5U4I|1|A|U|2849
5U4I|1|A|A|2850
5U4I|1|A|A|2851
5U4I|1|A|G|2852
*
5U4I|1|A|U|2865
5U4I|1|A|U|2866
5U4I|1|A|G|2867
5U4I|1|A|A|2868
5U4I|1|A|G|2869

Current chains

Chain A

23S rRNA

Nearby chains

Chain O

50S ribosomal protein L17

Chain Q

50S ribosomal protein L19