3D structure

PDB id
5U9F (explore in PDB, NAKB, or RNA 3D Hub)
Description
3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CCAGUAG*CGAACG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5U9F_007 not in the Motif Atlas
Homologous match to IL_5J7L_251
Geometric discrepancy: 0.1237
The information below is about IL_5J7L_251
Detailed Annotation
7x6 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_26307.2
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
9

Unit IDs

5U9F|1|01|C|239
5U9F|1|01|C|240
5U9F|1|01|A|241
5U9F|1|01|G|242
5U9F|1|01|U|243
5U9F|1|01|A|244
5U9F|1|01|G|245
*
5U9F|1|01|C|253
5U9F|1|01|G|254
5U9F|1|01|A|255
5U9F|1|01|A|256
5U9F|1|01|C|257
5U9F|1|01|G|258

Current chains

Chain 01
23S ribosomal RNA

Nearby chains

Chain 14
50S ribosomal protein L15
Chain 33
50S ribosomal protein L35

Coloring options:


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