IL_5U9F_016
3D structure
- PDB id
- 5U9F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GAAAC*GAGAUAGC
- Length
- 13 nucleotides
- Bulged bases
- 5U9F|1|01|G|801, 5U9F|1|01|G|805
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5U9F_016 not in the Motif Atlas
- Homologous match to IL_5J7L_260
- Geometric discrepancy: 0.1199
- The information below is about IL_5J7L_260
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_54041.2
- Basepair signature
- cWW-L-R-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
5U9F|1|01|G|674
5U9F|1|01|A|675
5U9F|1|01|A|676
5U9F|1|01|A|677
5U9F|1|01|C|678
*
5U9F|1|01|G|799
5U9F|1|01|A|800
5U9F|1|01|G|801
5U9F|1|01|A|802
5U9F|1|01|U|803
5U9F|1|01|A|804
5U9F|1|01|G|805
5U9F|1|01|C|806
Current chains
- Chain 01
- 23S ribosomal RNA
Nearby chains
- Chain 06
- 50S ribosomal protein L4
- Chain 14
- 50S ribosomal protein L15
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