3D structure

PDB id
5U9F (explore in PDB, NAKB, or RNA 3D Hub)
Description
3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CCA*UG
Length
5 nucleotides
Bulged bases
5U9F|1|01|C|995
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5U9F_032 not in the Motif Atlas
Homologous match to IL_7RQB_035
Geometric discrepancy: 0.1321
The information below is about IL_7RQB_035
Detailed Annotation
Single bulged C
Broad Annotation
No text annotation
Motif group
IL_61258.12
Basepair signature
cWW-L-cWW
Number of instances in this motif group
40

Unit IDs

5U9F|1|01|C|994
5U9F|1|01|C|995
5U9F|1|01|A|996
*
5U9F|1|01|U|1159
5U9F|1|01|G|1160

Current chains

Chain 01
23S ribosomal RNA

Nearby chains

Chain 12
50S ribosomal protein L13
Chain 19
50S ribosomal protein L20
Chain 20
50S ribosomal protein L21
Chain 28
50S ribosomal protein L30

Coloring options:


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