IL_5U9F_053

3D structure

PDB id

5U9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAAG*CCUGC

Length

9 nucleotides

Bulged bases

5U9F|1|01|U|1559

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5U9F_053 not in the Motif Atlas

Homologous match to IL_5J7L_296

Geometric discrepancy: 0.1692

The information below is about IL_5J7L_296

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_58112.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

5U9F|1|01|G|1432
5U9F|1|01|A|1433
5U9F|1|01|A|1434
5U9F|1|01|G|1435
*
5U9F|1|01|C|1557
5U9F|1|01|C|1558
5U9F|1|01|U|1559
5U9F|1|01|G|1560
5U9F|1|01|C|1561

Current chains

Chain 01

23S ribosomal RNA

Nearby chains