3D structure

PDB id
5U9F (explore in PDB, NAKB, or RNA 3D Hub)
Description
3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
UAAG*UGAUG
Length
9 nucleotides
Bulged bases
5U9F|1|01|U|1523
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5U9F_055 not in the Motif Atlas
Homologous match to IL_5J7L_299
Geometric discrepancy: 0.1087
The information below is about IL_5J7L_299
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_68574.4
Basepair signature
cWW-tHH-tHS-cWW
Number of instances in this motif group
3

Unit IDs

5U9F|1|01|U|1468
5U9F|1|01|A|1469
5U9F|1|01|A|1470
5U9F|1|01|G|1471
*
5U9F|1|01|U|1520
5U9F|1|01|G|1521
5U9F|1|01|A|1522
5U9F|1|01|U|1523
5U9F|1|01|G|1524

Current chains

Chain 01
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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