3D structure

PDB id
5U9F (explore in PDB, NAKB, or RNA 3D Hub)
Description
3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CGAAAUUCCUUG*CCUG
Length
16 nucleotides
Bulged bases
5U9F|1|01|A|1938, 5U9F|1|01|U|1944, 5U9F|1|01|U|1963
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5U9F_074 not in the Motif Atlas
Homologous match to IL_4WF9_077
Geometric discrepancy: 0.1589
The information below is about IL_4WF9_077
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_42218.2
Basepair signature
cWW-L-R-cHW-cWW-L-L-L-R-L
Number of instances in this motif group
5

Unit IDs

5U9F|1|01|C|1934
5U9F|1|01|G|1935
5U9F|1|01|A|1936
5U9F|1|01|A|1937
5U9F|1|01|A|1938
5U9F|1|01|U|1939
5U9F|1|01|U|1940
5U9F|1|01|C|1941
5U9F|1|01|C|1942
5U9F|1|01|U|1943
5U9F|1|01|U|1944
5U9F|1|01|G|1945
*
5U9F|1|01|C|1961
5U9F|1|01|C|1962
5U9F|1|01|U|1963
5U9F|1|01|G|1964

Current chains

Chain 01
23S ribosomal RNA

Nearby chains

Chain 04
50S ribosomal protein L2
Chain A
Small subunit ribosomal RNA; SSU rRNA
Chain Z
Peptide chain release factor RF2

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1816 s
Application loaded.