3D structure

PDB id
5U9F (explore in PDB, NAKB, or RNA 3D Hub)
Description
3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GAUAAG*CGAAAC
Length
12 nucleotides
Bulged bases
5U9F|1|01|A|2765
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5U9F_101 not in the Motif Atlas
Homologous match to IL_5J7L_350
Geometric discrepancy: 0.0852
The information below is about IL_5J7L_350
Detailed Annotation
UAA/GAN with extra cWW
Broad Annotation
No text annotation
Motif group
IL_49767.8
Basepair signature
cWW-cWW-tWH-L-tHS-cWW
Number of instances in this motif group
6

Unit IDs

5U9F|1|01|G|2737
5U9F|1|01|A|2738
5U9F|1|01|U|2739
5U9F|1|01|A|2740
5U9F|1|01|A|2741
5U9F|1|01|G|2742
*
5U9F|1|01|C|2762
5U9F|1|01|G|2763
5U9F|1|01|A|2764
5U9F|1|01|A|2765
5U9F|1|01|A|2766
5U9F|1|01|C|2767

Current chains

Chain 01
23S ribosomal RNA

Nearby chains

Chain 08
50S ribosomal protein L6
Chain 12
50S ribosomal protein L13
Chain 34
50S ribosomal protein L36

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