IL_5U9F_121
3D structure
- PDB id
- 5U9F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GGAUAAC*GCUAAUAC
- Length
- 15 nucleotides
- Bulged bases
- 5U9F|1|A|U|173
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5U9F_121 not in the Motif Atlas
- Homologous match to IL_5J7L_012
- Geometric discrepancy: 0.1421
- The information below is about IL_5J7L_012
- Detailed Annotation
- tWH-tWH-tHW-tHW
- Broad Annotation
- No text annotation
- Motif group
- IL_80604.6
- Basepair signature
- cWW-cWW-tWH-tWH-tHW-tHW-cWW
- Number of instances in this motif group
- 3
Unit IDs
5U9F|1|A|G|147
5U9F|1|A|G|148
5U9F|1|A|A|149
5U9F|1|A|U|150
5U9F|1|A|A|151
5U9F|1|A|A|152
5U9F|1|A|C|153
*
5U9F|1|A|G|168
5U9F|1|A|C|169
5U9F|1|A|U|170
5U9F|1|A|A|171
5U9F|1|A|A|172
5U9F|1|A|U|173
5U9F|1|A|A|174
5U9F|1|A|C|175
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain T
- 30S ribosomal protein S20
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