3D structure

PDB id
5U9F (explore in PDB, NAKB, or RNA 3D Hub)
Description
3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GGAC*GC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5U9F_122 not in the Motif Atlas
Geometric match to IL_6CZR_155
Geometric discrepancy: 0.3244
The information below is about IL_6CZR_155
Detailed Annotation
Minor groove platform
Broad Annotation
No text annotation
Motif group
IL_95583.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
12

Unit IDs

5U9F|1|A|G|203
5U9F|1|A|G|204
5U9F|1|A|A|205
5U9F|1|A|C|206
*
5U9F|1|A|G|213
5U9F|1|A|C|214

Current chains

Chain A
16S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1968 s
Application loaded.