3D structure

PDB id
5U9F (explore in PDB, NAKB, or RNA 3D Hub)
Description
3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
UUAAUUGAUG*UUGAUCGAAG
Length
20 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5U9F_178 not in the Motif Atlas
Homologous match to IL_5J7L_387
Geometric discrepancy: 0.1121
The information below is about IL_5J7L_387
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_61249.1
Basepair signature
cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW
Number of instances in this motif group
1

Unit IDs

5U9F|1|01|U|1851
5U9F|1|01|U|1852
5U9F|1|01|A|1853
5U9F|1|01|A|1854
5U9F|1|01|U|1855
5U9F|1|01|U|1856
5U9F|1|01|G|1857
5U9F|1|01|A|1858
5U9F|1|01|U|1859
5U9F|1|01|G|1860
*
5U9F|1|01|U|1882
5U9F|1|01|U|1883
5U9F|1|01|G|1884
5U9F|1|01|A|1885
5U9F|1|01|U|1886
5U9F|1|01|C|1887
5U9F|1|01|G|1888
5U9F|1|01|A|1889
5U9F|1|01|A|1890
5U9F|1|01|G|1891

Current chains

Chain 01
23S ribosomal RNA

Nearby chains

Chain 03
50S ribosomal protein L1
Chain X
Transfer RNA; tRNA

Coloring options:


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