IL_5U9G_007
3D structure
- PDB id
- 5U9G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CCAGUAG*CGAACG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5U9G_007 not in the Motif Atlas
- Homologous match to IL_5J7L_251
- Geometric discrepancy: 0.1159
- The information below is about IL_5J7L_251
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_26307.2
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 9
Unit IDs
5U9G|1|01|C|239
5U9G|1|01|C|240
5U9G|1|01|A|241
5U9G|1|01|G|242
5U9G|1|01|U|243
5U9G|1|01|A|244
5U9G|1|01|G|245
*
5U9G|1|01|C|253
5U9G|1|01|G|254
5U9G|1|01|A|255
5U9G|1|01|A|256
5U9G|1|01|C|257
5U9G|1|01|G|258
Current chains
- Chain 01
- 23S ribosomal RNA
Nearby chains
- Chain 14
- 50S ribosomal protein L15
- Chain 33
- 50S ribosomal protein L35
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