IL_5U9G_046

3D structure

PDB id

5U9G (explore in PDB, NAKB, or RNA 3D Hub)

Description

3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

5U9G|1|01|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5U9G_046 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.1214

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

5U9G|1|01|C|1208
5U9G|1|01|U|1209
5U9G|1|01|G|1210
5U9G|1|01|C|1211
5U9G|1|01|G|1212
5U9G|1|01|A|1213
5U9G|1|01|A|1214
5U9G|1|01|G|1215
*
5U9G|1|01|U|1234
5U9G|1|01|G|1235
5U9G|1|01|G|1236
5U9G|1|01|A|1237
5U9G|1|01|G|1238

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L20