IL_5U9G_056

3D structure

PDB id

5U9G (explore in PDB, NAKB, or RNA 3D Hub)

Description

3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GC*GUC

Length

5 nucleotides

Bulged bases

5U9G|1|01|U|1460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5U9G_056 not in the Motif Atlas

Geometric match to IL_4ZT0_004

Geometric discrepancy: 0.3244

The information below is about IL_4ZT0_004

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

5U9G|1|01|G|1450
5U9G|1|01|C|1451
*
5U9G|1|01|G|1459
5U9G|1|01|U|1460
5U9G|1|01|C|1461

Current chains

Chain 01

23S ribosomal RNA

Nearby chains