3D structure

PDB id
5U9G (explore in PDB, NAKB, or RNA 3D Hub)
Description
3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure I)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GC*GUC
Length
5 nucleotides
Bulged bases
5U9G|1|01|U|1460
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5U9G_056 not in the Motif Atlas
Geometric match to IL_4ZT0_004
Geometric discrepancy: 0.3244
The information below is about IL_4ZT0_004
Detailed Annotation
Single bulged U
Broad Annotation
No text annotation
Motif group
IL_89505.3
Basepair signature
cWW-L-cWW
Number of instances in this motif group
123

Unit IDs

5U9G|1|01|G|1450
5U9G|1|01|C|1451
*
5U9G|1|01|G|1459
5U9G|1|01|U|1460
5U9G|1|01|C|1461

Current chains

Chain 01
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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