3D structure

PDB id
5U9G (explore in PDB, NAKB, or RNA 3D Hub)
Description
3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure I)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
ACCCC*GAACU
Length
10 nucleotides
Bulged bases
5U9G|1|02|C|35
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5U9G_110 not in the Motif Atlas
Homologous match to IL_5J7L_358
Geometric discrepancy: 0.3084
The information below is about IL_5J7L_358
Detailed Annotation
Symmetric double minor groove platform
Broad Annotation
No text annotation
Motif group
IL_58103.11
Basepair signature
cWW-cSH-cWS-L-tSW-R-R-cWW
Number of instances in this motif group
9

Unit IDs

5U9G|1|02|A|34
5U9G|1|02|C|35
5U9G|1|02|C|36
5U9G|1|02|C|37
5U9G|1|02|C|38
*
5U9G|1|02|G|44
5U9G|1|02|A|45
5U9G|1|02|A|46
5U9G|1|02|C|47
5U9G|1|02|U|48

Current chains

Chain 02
5S ribosomal RNA

Nearby chains

Chain 01
Large subunit ribosomal RNA; LSU rRNA
Chain 07
50S ribosomal protein L5
Chain 17
50S ribosomal protein L18
Chain 29
50S ribosomal protein L31

Coloring options:


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