IL_5U9G_110
3D structure
- PDB id
- 5U9G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- ACCCC*GAACU
- Length
- 10 nucleotides
- Bulged bases
- 5U9G|1|02|C|35
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5U9G_110 not in the Motif Atlas
- Homologous match to IL_5J7L_358
- Geometric discrepancy: 0.3084
- The information below is about IL_5J7L_358
- Detailed Annotation
- Symmetric double minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_58103.11
- Basepair signature
- cWW-cSH-cWS-L-tSW-R-R-cWW
- Number of instances in this motif group
- 9
Unit IDs
5U9G|1|02|A|34
5U9G|1|02|C|35
5U9G|1|02|C|36
5U9G|1|02|C|37
5U9G|1|02|C|38
*
5U9G|1|02|G|44
5U9G|1|02|A|45
5U9G|1|02|A|46
5U9G|1|02|C|47
5U9G|1|02|U|48
Current chains
- Chain 02
- 5S ribosomal RNA
Nearby chains
- Chain 01
- Large subunit ribosomal RNA; LSU rRNA
- Chain 07
- 50S ribosomal protein L5
- Chain 17
- 50S ribosomal protein L18
- Chain 29
- 50S ribosomal protein L31
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