IL_5UQ7_010

3D structure

PDB id

5UQ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stemloop and E-site tRNA ('in' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGAAU*AUAG

Length

9 nucleotides

Bulged bases

5UQ7|1|A|A|283

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UQ7_010 not in the Motif Atlas

Geometric match to IL_7RQB_057

Geometric discrepancy: 0.1691

The information below is about IL_7RQB_057

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_04059.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

5UQ7|1|A|C|280
5UQ7|1|A|G|281
5UQ7|1|A|A|282
5UQ7|1|A|A|283
5UQ7|1|A|U|284
*
5UQ7|1|A|A|357
5UQ7|1|A|U|358
5UQ7|1|A|A|359
5UQ7|1|A|G|360

Current chains

Chain A

23S rRNA

Nearby chains