IL_5UQ7_062

3D structure

PDB id

5UQ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stemloop and E-site tRNA ('in' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAAG*UGACAAC

Length

12 nucleotides

Bulged bases

5UQ7|1|A|C|1543

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UQ7_062 not in the Motif Atlas

Homologous match to IL_7RQB_063

Geometric discrepancy: 0.1595

The information below is about IL_7RQB_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02656.1

Basepair signature

cWW-L-R-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

5UQ7|1|A|G|1526
5UQ7|1|A|G|1527
5UQ7|1|A|A|1528|||A
5UQ7|1|A|A|1528|||B
5UQ7|1|A|G|1529
*
5UQ7|1|A|U|1540
5UQ7|1|A|G|1541
5UQ7|1|A|A|1542
5UQ7|1|A|C|1543
5UQ7|1|A|A|1544
5UQ7|1|A|A|1545
5UQ7|1|A|C|1546

Current chains

Chain A

23S rRNA

Nearby chains