IL_5UQ7_088
3D structure
- PDB id
- 5UQ7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome complex with dnaX mRNA stemloop and E-site tRNA ('in' conformation)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CAG*CGGAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5UQ7_088 not in the Motif Atlas
- Homologous match to IL_7RQB_088
- Geometric discrepancy: 0.2463
- The information below is about IL_7RQB_088
- Detailed Annotation
- Isolated tHS basepair with bulges
- Broad Annotation
- No text annotation
- Motif group
- IL_38958.7
- Basepair signature
- cWW-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
5UQ7|1|A|C|2297
5UQ7|1|A|A|2298
5UQ7|1|A|G|2299
*
5UQ7|1|A|C|2317
5UQ7|1|A|G|2318
5UQ7|1|A|G|2319
5UQ7|1|A|A|2320
5UQ7|1|A|G|2321
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 0
- 50S ribosomal protein L27
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain G
- 50S ribosomal protein L5
- Chain S
- 50S ribosomal protein L18
Coloring options: