IL_5UQ7_129

3D structure

PDB id

5UQ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stemloop and E-site tRNA ('in' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCAAU*AC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UQ7_129 not in the Motif Atlas

Geometric match to IL_5J7L_018

Geometric discrepancy: 0.162

The information below is about IL_5J7L_018

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

5UQ7|1|a|G|371
5UQ7|1|a|C|372
5UQ7|1|a|A|373
5UQ7|1|a|A|374
5UQ7|1|a|U|375
*
5UQ7|1|a|A|389
5UQ7|1|a|C|390

Current chains

Chain a

16S rRNA

Nearby chains

Chain p

30S ribosomal protein S16