IL_5UQ7_133

3D structure

PDB id

5UQ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stemloop and E-site tRNA ('in' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAAACC*GACUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UQ7_133 not in the Motif Atlas

Homologous match to IL_4LFB_019

Geometric discrepancy: 0.1932

The information below is about IL_4LFB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31561.1

Basepair signature

cWW-L-R-tWH-tWH-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

5UQ7|1|a|G|450
5UQ7|1|a|A|451
5UQ7|1|a|A|452
5UQ7|1|a|A|453
5UQ7|1|a|C|454
5UQ7|1|a|C|455
*
5UQ7|1|a|G|476
5UQ7|1|a|A|477
5UQ7|1|a|C|479
5UQ7|1|a|U|480
5UQ7|1|a|G|481
5UQ7|1|a|A|482
5UQ7|1|a|C|483

Current chains

Chain a

16S rRNA

Nearby chains

Chain p

30S ribosomal protein S16