IL_5UQ7_165

3D structure

PDB id

5UQ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stemloop and E-site tRNA ('in' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAUG*CUAAUC

Length

10 nucleotides

Bulged bases

5UQ7|1|a|U|1257, 5UQ7|1|a|A|1280, 5UQ7|1|a|U|1281

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UQ7_165 not in the Motif Atlas

Homologous match to IL_4LFB_052

Geometric discrepancy: 0.2669

The information below is about IL_4LFB_052

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_08849.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

5UQ7|1|a|G|1255
5UQ7|1|a|A|1256
5UQ7|1|a|U|1257
5UQ7|1|a|G|1258
*
5UQ7|1|a|C|1277
5UQ7|1|a|U|1278
5UQ7|1|a|A|1279
5UQ7|1|a|A|1280
5UQ7|1|a|U|1281
5UQ7|1|a|C|1282

Current chains

Chain a

16S rRNA

Nearby chains

Chain c

30S ribosomal protein S3

Chain j

30S ribosomal protein S10

Chain n

30S ribosomal protein S14 type Z