IL_5UQ7_181

3D structure

PDB id

5UQ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stemloop and E-site tRNA ('in' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGCUGAC*GGUGGAG

Length

14 nucleotides

Bulged bases

5UQ7|1|A|G|932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UQ7_181 not in the Motif Atlas

Homologous match to IL_9DFE_024

Geometric discrepancy: 0.0882

The information below is about IL_9DFE_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68243.1

Basepair signature

cWW-L-cWW-cWW-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

5UQ7|1|A|C|844
5UQ7|1|A|G|845
5UQ7|1|A|C|846
5UQ7|1|A|U|847
5UQ7|1|A|G|848
5UQ7|1|A|A|849
5UQ7|1|A|C|850
*
5UQ7|1|A|G|927
5UQ7|1|A|G|928
5UQ7|1|A|U|930
5UQ7|1|A|G|931
5UQ7|1|A|G|932
5UQ7|1|A|A|933
5UQ7|1|A|G|934

Current chains

Chain A

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L30