IL_5UQ7_188

3D structure

PDB id

5UQ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stemloop and E-site tRNA ('in' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCAC*GGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UQ7_188 not in the Motif Atlas

Homologous match to IL_4LFB_067

Geometric discrepancy: 0.181

The information below is about IL_4LFB_067

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

5UQ7|1|a|C|1259
5UQ7|1|a|C|1260
5UQ7|1|a|A|1261
5UQ7|1|a|C|1262
*
5UQ7|1|a|G|1273
5UQ7|1|a|G|1274
5UQ7|1|a|A|1275
5UQ7|1|a|G|1276

Current chains

Chain a

16S rRNA

Nearby chains

Chain u

30S ribosomal protein Thx