IL_5UQ8_001

3D structure

PDB id

5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUGGAUG*CUGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UQ8_001 not in the Motif Atlas

Geometric match to IL_4WF9_001

Geometric discrepancy: 0.0986

The information below is about IL_4WF9_001

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_04021.2

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5UQ8|1|A|G|24
5UQ8|1|A|U|25
5UQ8|1|A|G|26
5UQ8|1|A|G|27
5UQ8|1|A|A|28
5UQ8|1|A|U|29
5UQ8|1|A|G|30
*
5UQ8|1|A|C|510
5UQ8|1|A|U|511
5UQ8|1|A|G|512
5UQ8|1|A|A|513
5UQ8|1|A|A|514
5UQ8|1|A|A|515
5UQ8|1|A|C|516

Current chains

Chain A

23S rRNA

Nearby chains

Chain 5

50S ribosomal protein L32

Chain U

50S ribosomal protein L20

Chain W

50S ribosomal protein L22