IL_5UQ8_021

3D structure

PDB id

5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGUG*CUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UQ8_021 not in the Motif Atlas

Homologous match to IL_7RQB_022

Geometric discrepancy: 0.1021

The information below is about IL_7RQB_022

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_05564.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

14

Unit IDs

5UQ8|1|A|G|738
5UQ8|1|A|G|739
5UQ8|1|A|U|740
5UQ8|1|A|G|741
*
5UQ8|1|A|C|756
5UQ8|1|A|U|757
5UQ8|1|A|C|758

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L34