IL_5UQ8_038

3D structure

PDB id

5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUAAGUG*CUUAAG

Length

13 nucleotides

Bulged bases

5UQ8|1|A|U|1142|||A, 5UQ8|1|A|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UQ8_038 not in the Motif Atlas

Geometric match to IL_7RQB_039

Geometric discrepancy: 0.0797

The information below is about IL_7RQB_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57188.3

Basepair signature

cWW-cSH-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

5UQ8|1|A|C|1018
5UQ8|1|A|U|1019
5UQ8|1|A|A|1020
5UQ8|1|A|A|1021
5UQ8|1|A|G|1022
5UQ8|1|A|U|1023
5UQ8|1|A|G|1024
*
5UQ8|1|A|C|1140
5UQ8|1|A|U|1141
5UQ8|1|A|U|1142|||A
5UQ8|1|A|A|1142|||B
5UQ8|1|A|A|1143
5UQ8|1|A|G|1144

Current chains

Chain A

23S rRNA

Nearby chains

Chain 9

50S ribosomal protein L36

Chain H

50S ribosomal protein L6

Chain N

50S ribosomal protein L13