3D structure

PDB id
5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CUAAGUG*CUUAAG
Length
13 nucleotides
Bulged bases
5UQ8|1|A|U|1142|||A, 5UQ8|1|A|A|1143
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5UQ8_038 not in the Motif Atlas
Geometric match to IL_7RQB_039
Geometric discrepancy: 0.0797
The information below is about IL_7RQB_039
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_57188.3
Basepair signature
cWW-cSH-tWW-L-tWW-cWW-cSH
Number of instances in this motif group
5

Unit IDs

5UQ8|1|A|C|1018
5UQ8|1|A|U|1019
5UQ8|1|A|A|1020
5UQ8|1|A|A|1021
5UQ8|1|A|G|1022
5UQ8|1|A|U|1023
5UQ8|1|A|G|1024
*
5UQ8|1|A|C|1140
5UQ8|1|A|U|1141
5UQ8|1|A|U|1142|||A
5UQ8|1|A|A|1142|||B
5UQ8|1|A|A|1143
5UQ8|1|A|G|1144

Current chains

Chain A
23S rRNA

Nearby chains

Chain 9
50S ribosomal protein L36
Chain H
50S ribosomal protein L6
Chain N
50S ribosomal protein L13

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1599 s