IL_5UQ8_044

3D structure

PDB id

5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

5UQ8|1|A|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UQ8_044 not in the Motif Atlas

Homologous match to IL_9DFE_043

Geometric discrepancy: 0.4568

The information below is about IL_9DFE_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5UQ8|1|A|G|1087
5UQ8|1|A|A|1088
5UQ8|1|A|G|1089
5UQ8|1|A|U|1090
5UQ8|1|A|G|1091
*
5UQ8|1|A|C|1100
5UQ8|1|A|U|1101
5UQ8|1|A|C|1102

Current chains

Chain A

23S rRNA

Nearby chains

Chain 9

50S ribosomal protein L36