IL_5UQ8_046

3D structure

PDB id

5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAUG*UAAG

Length

9 nucleotides

Bulged bases

5UQ8|1|A|U|1205

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UQ8_046 not in the Motif Atlas

Homologous match to IL_7RQB_046

Geometric discrepancy: 0.138

The information below is about IL_7RQB_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68574.2

Basepair signature

cWW-tHH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

5UQ8|1|A|C|1202
5UQ8|1|A|G|1203
5UQ8|1|A|A|1204
5UQ8|1|A|U|1205
5UQ8|1|A|G|1206
*
5UQ8|1|A|U|1240
5UQ8|1|A|A|1241
5UQ8|1|A|A|1242
5UQ8|1|A|G|1243

Current chains

Chain A

23S rRNA

Nearby chains

Chain F

50S ribosomal protein L4

Chain P

50S ribosomal protein L15