IL_5UQ8_060

3D structure

PDB id

5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGAAG*UGGU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UQ8_060 not in the Motif Atlas

Homologous match to IL_7RQB_060

Geometric discrepancy: 0.1483

The information below is about IL_7RQB_060

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_07235.1

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

5UQ8|1|A|A|1469
5UQ8|1|A|G|1470
5UQ8|1|A|A|1471
5UQ8|1|A|A|1472
5UQ8|1|A|G|1473
*
5UQ8|1|A|U|1518
5UQ8|1|A|G|1519
5UQ8|1|A|G|1520
5UQ8|1|A|U|1523

Current chains

Chain A

23S rRNA

Nearby chains