3D structure

PDB id
5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CGUAAC*GGAGAAG
Length
13 nucleotides
Bulged bases
5UQ8|1|A|G|1699
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5UQ8_068 not in the Motif Atlas
Homologous match to IL_7RQB_068
Geometric discrepancy: 0.1126
The information below is about IL_7RQB_068
Detailed Annotation
tSH-tSH-tHH-tHS
Broad Annotation
No text annotation
Motif group
IL_65969.2
Basepair signature
cWW-tSH-tSH-tHH-tHS-cWW
Number of instances in this motif group
8

Unit IDs

5UQ8|1|A|C|1686
5UQ8|1|A|G|1687
5UQ8|1|A|U|1688
5UQ8|1|A|A|1689
5UQ8|1|A|A|1690
5UQ8|1|A|C|1691
*
5UQ8|1|A|G|1696
5UQ8|1|A|G|1697
5UQ8|1|A|A|1698
5UQ8|1|A|G|1699
5UQ8|1|A|A|1700
5UQ8|1|A|A|1701
5UQ8|1|A|G|1702

Current chains

Chain A
23S rRNA

Nearby chains

Chain D
50S ribosomal protein L2
Chain a
Small subunit ribosomal RNA; SSU rRNA

Coloring options:


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