IL_5UQ8_068

3D structure

PDB id

5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

5UQ8|1|A|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UQ8_068 not in the Motif Atlas

Homologous match to IL_7RQB_068

Geometric discrepancy: 0.1126

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

5UQ8|1|A|C|1686
5UQ8|1|A|G|1687
5UQ8|1|A|U|1688
5UQ8|1|A|A|1689
5UQ8|1|A|A|1690
5UQ8|1|A|C|1691
*
5UQ8|1|A|G|1696
5UQ8|1|A|G|1697
5UQ8|1|A|A|1698
5UQ8|1|A|G|1699
5UQ8|1|A|A|1700
5UQ8|1|A|A|1701
5UQ8|1|A|G|1702

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA