IL_5UQ8_070

3D structure

PDB id

5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGCGAAC*GGAGGUAUA

Length

16 nucleotides

Bulged bases

5UQ8|1|A|G|1801, 5UQ8|1|A|G|1816, 5UQ8|1|A|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UQ8_070 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.1045

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

5UQ8|1|A|U|1798
5UQ8|1|A|G|1799
5UQ8|1|A|C|1800
5UQ8|1|A|G|1801
5UQ8|1|A|A|1802
5UQ8|1|A|A|1803
5UQ8|1|A|C|1804
*
5UQ8|1|A|G|1813
5UQ8|1|A|G|1814
5UQ8|1|A|A|1815
5UQ8|1|A|G|1816
5UQ8|1|A|G|1817
5UQ8|1|A|U|1818
5UQ8|1|A|A|1819
5UQ8|1|A|U|1820
5UQ8|1|A|A|1821

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA