IL_5UQ8_077

3D structure

PDB id

5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAAA(5MU)UC(5MC)UUG*C(5MC)UG

Length

16 nucleotides

Bulged bases

5UQ8|1|A|A|1938, 5UQ8|1|A|C|1941, 5UQ8|1|A|U|1944, 5UQ8|1|A|U|1963

QA status

Modified nucleotides: 5MU, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UQ8_077 not in the Motif Atlas

Homologous match to IL_7RQB_077

Geometric discrepancy: 0.0905

The information below is about IL_7RQB_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5UQ8|1|A|C|1934
5UQ8|1|A|G|1935
5UQ8|1|A|A|1936
5UQ8|1|A|A|1937
5UQ8|1|A|A|1938
5UQ8|1|A|5MU|1939
5UQ8|1|A|U|1940
5UQ8|1|A|C|1941
5UQ8|1|A|5MC|1942
5UQ8|1|A|U|1943
5UQ8|1|A|U|1944
5UQ8|1|A|G|1945
*
5UQ8|1|A|C|1961
5UQ8|1|A|5MC|1962
5UQ8|1|A|U|1963
5UQ8|1|A|G|1964

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA