IL_5UQ8_085

3D structure

PDB id

5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UQ8_085 not in the Motif Atlas

Geometric match to IL_5AY2_001

Geometric discrepancy: 0.3443

The information below is about IL_5AY2_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

5UQ8|1|A|C|2108
5UQ8|1|A|U|2109
5UQ8|1|A|G|2110
*
5UQ8|1|A|C|2179
5UQ8|1|A|U|2180
5UQ8|1|A|G|2181

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L1

Chain z

Transfer RNA; tRNA