IL_5UQ8_086

3D structure

PDB id

5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

5UQ8|1|A|G|2116

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UQ8_086 not in the Motif Atlas

Homologous match to IL_7RQB_085

Geometric discrepancy: 0.4227

The information below is about IL_7RQB_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5UQ8|1|A|G|2110
5UQ8|1|A|C|2111
5UQ8|1|A|G|2112
5UQ8|1|A|U|2113
5UQ8|1|A|A|2114
5UQ8|1|A|G|2115
5UQ8|1|A|G|2116
5UQ8|1|A|A|2117
5UQ8|1|A|U|2118
5UQ8|1|A|A|2119
5UQ8|1|A|G|2120
*
5UQ8|1|A|C|2178
5UQ8|1|A|C|2179

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L1

Chain z

Transfer RNA; tRNA