IL_5UQ8_090

3D structure

PDB id

5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UQ8_090 not in the Motif Atlas

Homologous match to IL_7RQB_089

Geometric discrepancy: 0.1213

The information below is about IL_7RQB_089

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.10

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

33

Unit IDs

5UQ8|1|A|C|2350
5UQ8|1|A|G|2351
5UQ8|1|A|A|2352
5UQ8|1|A|G|2353
*
5UQ8|1|A|C|2364
5UQ8|1|A|G|2365
5UQ8|1|A|A|2366
5UQ8|1|A|G|2367

Current chains

Chain A

23S rRNA

Nearby chains

Chain 0

50S ribosomal protein L27

Chain 8

50S ribosomal protein L35