IL_5UQ8_098

3D structure

PDB id

5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

5UQ8|1|A|G|2576, 5UQ8|1|A|A|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UQ8_098 not in the Motif Atlas

Geometric match to IL_7A0S_089

Geometric discrepancy: 0.1024

The information below is about IL_7A0S_089

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

5UQ8|1|A|C|2510
5UQ8|1|A|U|2511
5UQ8|1|A|C|2512
*
5UQ8|1|A|G|2574
5UQ8|1|A|C|2575
5UQ8|1|A|G|2576
5UQ8|1|A|A|2577
5UQ8|1|A|G|2578

Current chains

Chain A

23S rRNA

Nearby chains

Chain 5

50S ribosomal protein L32

Chain E

50S ribosomal protein L3