3D structure

PDB id
5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CG*CAG
Length
5 nucleotides
Bulged bases
5UQ8|1|A|A|2602
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5UQ8_102 not in the Motif Atlas
Geometric match to IL_4V9F_090
Geometric discrepancy: 0.2128
The information below is about IL_4V9F_090
Detailed Annotation
Single bulged A
Broad Annotation
No text annotation
Motif group
IL_42771.1
Basepair signature
cWW-cWW
Number of instances in this motif group
6

Unit IDs

5UQ8|1|A|C|2591
5UQ8|1|A|G|2592
*
5UQ8|1|A|C|2601
5UQ8|1|A|A|2602
5UQ8|1|A|G|2603

Current chains

Chain A
23S rRNA

Nearby chains

Chain D
50S ribosomal protein L2
Chain y
Transfer RNA; tRNA

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1884 s