IL_5UQ8_116
3D structure
- PDB id
- 5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGAUGGUAC*GGAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5UQ8_116 not in the Motif Atlas
- Homologous match to IL_7RQB_115
- Geometric discrepancy: 0.0983
- The information below is about IL_7RQB_115
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.3
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
5UQ8|1|B|C|71
5UQ8|1|B|G|72
5UQ8|1|B|A|73
5UQ8|1|B|U|74
5UQ8|1|B|G|75
5UQ8|1|B|G|76
5UQ8|1|B|U|77
5UQ8|1|B|A|78
5UQ8|1|B|C|79
*
5UQ8|1|B|G|98
5UQ8|1|B|G|99
5UQ8|1|B|A|100
5UQ8|1|B|G|101
5UQ8|1|B|A|102
5UQ8|1|B|G|103
5UQ8|1|B|U|104
5UQ8|1|B|A|105
5UQ8|1|B|G|106
Current chains
- Chain B
- 5S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain Q
- 50S ribosomal protein L16
- Chain Z
- 50S ribosomal protein L25
Coloring options: