IL_5UQ8_121

3D structure

PDB id

5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGUGCGGGCCGCGG*CCGUGGUCAGCG

Length

26 nucleotides

Bulged bases

5UQ8|1|a|U|65, 5UQ8|1|a|G|70, 5UQ8|1|a|U|99, 5UQ8|1|a|C|100

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5UQ8|1|a|C|63
5UQ8|1|a|G|64
5UQ8|1|a|U|65
5UQ8|1|a|G|66
5UQ8|1|a|C|67
5UQ8|1|a|G|68
5UQ8|1|a|G|69
5UQ8|1|a|G|70
5UQ8|1|a|C|71
5UQ8|1|a|C|72
5UQ8|1|a|G|73
5UQ8|1|a|C|76
5UQ8|1|a|G|77
5UQ8|1|a|G|78
*
5UQ8|1|a|C|91
5UQ8|1|a|C|92
5UQ8|1|a|G|93
5UQ8|1|a|U|96
5UQ8|1|a|G|97
5UQ8|1|a|G|98
5UQ8|1|a|U|99
5UQ8|1|a|C|100
5UQ8|1|a|A|101
5UQ8|1|a|G|102
5UQ8|1|a|C|103
5UQ8|1|a|G|104

Current chains

Chain a

16S rRNA

Nearby chains

Chain t

30S ribosomal protein S20