IL_5UQ8_132

3D structure

PDB id

5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

5UQ8|1|a|A|412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UQ8_132 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1507

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

5UQ8|1|a|G|409
5UQ8|1|a|G|410
5UQ8|1|a|A|411
5UQ8|1|a|A|412
5UQ8|1|a|G|413
5UQ8|1|a|A|414
5UQ8|1|a|A|415
5UQ8|1|a|G|416
*
5UQ8|1|a|U|427
5UQ8|1|a|G|428
5UQ8|1|a|U|429
5UQ8|1|a|A|430
5UQ8|1|a|A|431
5UQ8|1|a|A|432
5UQ8|1|a|C|433

Current chains

Chain a

16S rRNA

Nearby chains

Chain d

30S ribosomal protein S4