IL_5UQ8_135
3D structure
- PDB id
- 5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGGCCAAC*GG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5UQ8_135 not in the Motif Atlas
- Homologous match to IL_5J7L_024
- Geometric discrepancy: 0.1567
- The information below is about IL_5J7L_024
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_41203.4
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 11
Unit IDs
5UQ8|1|a|C|504
5UQ8|1|a|G|505
5UQ8|1|a|G|506
5UQ8|1|a|C|507
5UQ8|1|a|C|508
5UQ8|1|a|A|509
5UQ8|1|a|A|510
5UQ8|1|a|C|511
*
5UQ8|1|a|G|540
5UQ8|1|a|G|541
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain d
- 30S ribosomal protein S4
- Chain e
- 30S ribosomal protein S5
- Chain l
- 30S ribosomal protein S12
Coloring options: