IL_5UQ8_146
3D structure
- PDB id
- 5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GAGUAG*CGCAGAUAC
- Length
- 15 nucleotides
- Bulged bases
- 5UQ8|1|a|A|702
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5UQ8_146 not in the Motif Atlas
- Homologous match to IL_6CZR_143
- Geometric discrepancy: 0.1779
- The information below is about IL_6CZR_143
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_37722.1
- Basepair signature
- cWW-L-tSH-L-tHW-tHS-R-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
5UQ8|1|a|G|683
5UQ8|1|a|A|684
5UQ8|1|a|G|685
5UQ8|1|a|U|686
5UQ8|1|a|A|687
5UQ8|1|a|G|688
*
5UQ8|1|a|C|699
5UQ8|1|a|G|700
5UQ8|1|a|C|701
5UQ8|1|a|A|702
5UQ8|1|a|G|703
5UQ8|1|a|A|704
5UQ8|1|a|U|705
5UQ8|1|a|A|706
5UQ8|1|a|C|707
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain k
- 30S ribosomal protein S11
- Chain r
- 30S ribosomal protein S18
Coloring options: